JOB CONTROL FILE FOR PROGRAM SIM (edit only inside curly brackets; no tabs) : Cumulate Distribution of Stochastic Simulation : JOB ID:{ PVA FORWARD PROJECTION. NOMINALLY COMPLETE. } : :{ LOGNORMAL ENVIRONMENTAL VARIATION IN LAMBDA. UNCERTAINTY IN THE } : :{ PARAMETERS OF THAT LOGNORMAL CONVEYED IN JOINT POSTERIOR SAMPLE } : :{ FROM THE RETROSPECTIVE ANALYSIS RPVAX05. THAT SMP FILE MUST BE } : :{ (RE)NAMED PVAX05.SMP (OPENED AND READ FROM PVAX05.F, NOT SIM) } : NAME JOB (must match name of job file; will name output files) : Job Name:{Pvax06A } : JOB SPECIFIC SUBROUTINE FILE (must match string from subroutine SIMIN) : File Name:{ PVAX06 } (named file of type F must be present in directory) : MONTE CARLO CONTROL : Seed: { 33 } (positive integer) : Sample: { 1000 } in thousands (positive integer) : Echo interval: { 5 } in thousands (positive integer) : OPTIONAL IMPORT OF POSTERIOR SAMPLE FILE : File name:{ } (named file must be of type SMP) : DATA SPECIFICATIONS : File name:{ } (named file must be of type DAT) : Read Format: { } : (blank for default; with parentheses for format) : Observations: { } (rows, non-negative integer) : Variables: { } (columns, non-negative integer) : REPORT PARAMETERS : number: {3} (positive integer up to 3) : NAME PARAMETERS : #1:{ (QUASI-)EXTINCTION SCORE, 1 FOR YES, 0 FOR NO } : #2:{ TIME TO (QUASI-)EXTINCTION WHEN IT OCCURS BY TIME HORIZON } : #3:{ POPULATION SIZE AT TIME HORIZON IF NOT (QUASI-)EXTINCT } : Abbreviated names : #1:{ P(Qx) } : #2:{ T(Qx) } : #3:{ N(Th) } : HISTOGRAM CONTROL (bins are integer; limits are floating point) : Parameter #1 Parameter #2 Parameter #3 : Number of bins: { 0 } | { 101 } | { 351 } | : Lower limit: { } | { -0.5 } | { 49.5 } | : Upper limit: { } | { 100.5 } | { 400.5 } | : Dimensionality for cumulation (0,1,2,3): {1} : Dimensionality for printing table: { } : JOB SPECIFIC FIXED VALUES : Number specified: { 6 } (non-negative integer) : Value (floating point) Name (lines may be inserted or deleted here) : 1:{ 100.00 }{ N0 INITIAL POPULATION }: 2:{ 100.0 }{ Th TIME HORIZON }: 3:{ 50.0 }{ Qx (QUASI-)EXTINCTION THRESHOLD }: 4:{ 400.0 }{ NKH HARD CEILING }: 5:{ 0.2 }{ Ds DEMOGRAPHIC STOCHASTICITY IN LAMBDA STD AT N=1 }: 6:{ 3.0 }{ Sw CUMULATION SWITCH }: :{ }{ 0. SUPPRESS T(qx) AND N(Th) }: :{ }{ 1. SUPPRESS T(qx) BUT NOT N(Th) }: :{ }{ 2. SUPPRESS N(Th) BUT NOT T(qx) }: :{ }{ 3. CUMULATE T(qx) AND N(Th) }: end of file HISTOGRAM CONTROL (bins are integer; limits are floating point) : Parameter #1 Parameter #2 Parameter #3 : Number of bins: { 0 } | { 51 } | { 101 } | : Lower limit: { } | { - 0.5 } | { -0.5 } | : Upper limit: { } | { 50.5 } | { 100.5 } | : Dimensionality for cumulation (0,1,2,3): {1} :